Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P11
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    27   0.10 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.32 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.98 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   0.98 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.1  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 207 NKRNPSGEGQIKGKTKLLYLFNSEHFHIY 121
           +KR P+G  +++GK K     NSE+F I+
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENFGIF 55


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 149 YLIPSIFIFIYRLNLLWPSTKNSRPKLAKSV 57
           Y+IP++ + +  L +LW  ++++   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 257 QSINKRPKLLYKINLKQTKGIRPARDKSKEKQNCYIYLI 141
           QSINK  +    +    T   R  RD++ E+Q+  ++L+
Sbjct: 250 QSINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKAMFLV 288


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 257 QSINKRPKLLYKINLKQTKGIRPARDKSKEKQNCYIYLI 141
           QSINK  +    +    T   R  RD++ E+Q+  ++L+
Sbjct: 245 QSINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKAMFLV 283


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 309 NIYFNRFTVTKIYTKLNSSSLKRFKNSLLKI 401
           N++  RFT+ K +T   +S     + S LK+
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKV 233


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 309 NIYFNRFTVTKIYTKLNSSSLKRFKNSLLKI 401
           N++  RFT+ K +T   +S     + S LK+
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKV 233


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 155 YIYLIPSIFIFIYRLNLLWPSTKNSRPKLAKSVQ 54
           + Y+IP IFI ++   LL  S +N    L +  +
Sbjct: 227 WAYVIPLIFIILFYSRLL-SSIRNHEKMLREQAK 259


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 155 YIYLIPSIFIFIYRLNLLWPSTKNSRPKLAKSVQ 54
           + Y+IP IFI ++   LL  S +N    L +  +
Sbjct: 227 WAYVIPLIFIILFYSRLL-SSIRNHEKMLREQAK 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,680
Number of Sequences: 438
Number of extensions: 2968
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)