Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P09
         (394 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   1.9  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   7.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   7.6  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 86  STVXQCCRPLNFRSMLVQQRLCFLP 160
           ST    CR   FR+   +  +CF P
Sbjct: 383 STTANSCRSSTFRNNRDEYNVCFRP 407


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 138 SSGCASCRYSR*AETEH 188
           S GC +C Y    E+ H
Sbjct: 33  SQGCKACGYHSPLESNH 49


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 207  DSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCXT 91
            DS+SG+     L+ + G+K S    + L+K   +    T
Sbjct: 967  DSLSGNNTGDALAPSGGKKGSSHPLAALQKLCDKTETHT 1005


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,453
Number of Sequences: 336
Number of extensions: 1403
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)