Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P08
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    28   0.51 
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    26   2.1  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   2.7  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   3.6  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    24   6.3  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    24   6.3  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    24   8.3  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 13  KDVPGAGLETTFVDDASLFTSISREK---FGHAGVFINHITITFLG*HFIYAPAEH 171
           K +  AG++TT + DA++F  +SR      G   +  N   +T+ G   +   A H
Sbjct: 247 KRLAQAGIDTTVISDATIFAIMSRVNKVILGTHAILGNGGLVTYSGAQLVAQAARH 302


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 152 MKCQPRNVIVIWFMKTPACPNFSRLM 75
           +K  PR V+V W+  +P    FS L+
Sbjct: 94  LKANPREVVVGWYATSPDLDAFSALI 119


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 250 GNHQQDDNNQLHGF 291
           GNH+ DD N+++GF
Sbjct: 277 GNHETDDMNKVYGF 290


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 197 PQYLREPPNSCADTKMLTEITNRTITTNFMAFLVS-PLVVL*DQNSLETR 343
           P  L+EP N  +DT  LTE  +R     FM+   + P + L D N+++ R
Sbjct: 139 PMNLKEPSNQESDTLSLTEKFSR-----FMSLCETYPELELMDSNNIQKR 183


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 129 NSDMVYEDSGMPELLPADARKKR 61
           N+ MV +D G P +L  D  KKR
Sbjct: 6   NAVMVRDDQGNPFILVRDQEKKR 28


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 231 AQELGGSRRYCGRHLAQTMAVLCWGIDEMSAEKRNSDMVYEDSGMPELL 85
           A +L GSR + G ++ +++  L   I+ +    R + + Y DS +  LL
Sbjct: 303 ATKLRGSRLFEGANINKSLLALGNCINALCDPHRRAHVPYRDSKLTRLL 351


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 72  EHQPGEVRA-CRSLHKPYHYYVSRLTFHLCP 161
           ++ P   RA CR++  PY +   R  F +CP
Sbjct: 50  QYDPVACRAPCRAVLNPYCHVDLRARFWICP 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,152
Number of Sequences: 5004
Number of extensions: 27651
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)