Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P08
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0020 + 19873173-19873949                                         30   0.64 
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490...    28   2.6  
01_03_0158 + 13323191-13323436,13324052-13324102                       27   3.4  
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555...    26   7.9  

>03_05_0020 + 19873173-19873949
          Length = 258

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 156 IDEMSAEKRNSDMVYEDSGMPELLPADARKKRGIIDECCLQACTRDV 16
           IDE+S + RN+  +   S M ELL  +      ++D   LQAC  ++
Sbjct: 20  IDEISRDTRNNTNIVMPSTMSELLQNERNVVPIVLDTNILQACENNL 66


>01_05_0104 +
           18148396-18148642,18148797-18148886,18148972-18149072,
           18149174-18149287,18149381-18149462,18149592-18149659,
           18149747-18149806,18149885-18150009,18150663-18150861,
           18150942-18151073,18151152-18151244,18151360-18152244,
           18152339-18152664,18153003-18153341,18153911-18153996,
           18154054-18154139
          Length = 1010

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 216 GSRRYCGRHLAQTMAVLCWGIDEMSAEKRNSDMVYEDSGMPELL 85
           G+R   G H+ +++  L   I ++S++KR+  + Y DS +  +L
Sbjct: 272 GARLKEGCHINRSLLTLTTVIRKLSSDKRSGHIPYRDSKLTRIL 315


>01_03_0158 + 13323191-13323436,13324052-13324102
          Length = 98

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 90  VRACRSLHKPYHYYVSRLTFHLC 158
           ++   +L  P H  V+RL FHLC
Sbjct: 57  IQTAMALKSPIHEVVARLRFHLC 79


>10_02_0127 +
           5555226-5555446,5555475-5555500,5555702-5555790,
           5558112-5558843
          Length = 355

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 99  CRSLHKP--YHYYVSRLTFHLCPSRALP*SELGVVHNIYESLLTLALTPKC 245
           C +L+      +Y+  L   LC SR      +G +   Y SLL L+L P C
Sbjct: 77  CHNLYSAPGLEWYIPGLEIKLC-SREWLLGMVGPMQRPYNSLLNLSLKPLC 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,168
Number of Sequences: 37544
Number of extensions: 193377
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)