Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P03
         (310 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   1.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   1.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   2.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   3.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   5.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   5.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   6.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   6.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   6.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 269 CKLRFQHVLQIVHPLCSVGGRGFRQPQPQA*ASAD 165
           C+ RF+    +VH  C       R P P   A+ D
Sbjct: 252 CRGRFRRRHHLVHHKCGGEEEAERAPAPAVRAAGD 286



 Score = 21.4 bits (43), Expect = 2.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 255 KAQLAGFPSSDHRPA 299
           +A  AG P  DHRPA
Sbjct: 295 RADGAGGPLHDHRPA 309


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 285 HLKENLQV-ALSTCSTNCSPSLLCWWP 208
           H+K  + V +LSTCS  C  + L  WP
Sbjct: 69  HIKGAIPVVSLSTCSMLCGSTQL--WP 93


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 285 HLKENLQVALSTCSTNCSPSLLCWWP 208
           +L E+ + +L+TC+  CS   +  WP
Sbjct: 56  YLVEDEETSLATCNMLCSEPAI--WP 79


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 5   HLAVSYFSCQGRGRF 49
           HLAV +FS +G+  F
Sbjct: 312 HLAVKHFSVEGQLEF 326


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 282 LKENLQVALSTCSTNCSPSLLCWWP 208
           + ENL++ L   S     S    WP
Sbjct: 211 INENLKMGLDIASITAQASSFVVWP 235


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 282 LKENLQVALSTCSTNCSPSLLCWWP 208
           + ENL++ L   S     S    WP
Sbjct: 211 INENLKMGLDIASITAQASSFVVWP 235


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 193 PNPKPEPVLTY 161
           P P+PEP +T+
Sbjct: 176 PPPQPEPPVTF 186


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 212 GRGFRQPQPQA 180
           G GFR P P A
Sbjct: 199 GAGFRSPYPSA 209


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 212 GRGFRQPQPQA 180
           G GFR P P A
Sbjct: 91  GAGFRSPYPSA 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,368
Number of Sequences: 336
Number of extensions: 610
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)