Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P02
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    27   2.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.9  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.8  

>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 183 SLEICLIKKKYEPKQINFLSWSCVLN 260
           S  I L+  KY PK     SW C+ N
Sbjct: 135 SFTIVLVSSKYNPKNYWNGSWRCICN 160


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 232 LICFGSYFFFIKQISKDYLVRCSALFKLIINCFRSLQLS 116
           L CFGSYF +I      YL        ++I  F S+++S
Sbjct: 542 LACFGSYFMYINHGWCSYLGGLIFTSYVLIYSFASIRIS 580


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 207 KKYEPKQINFLSWSCVLNCYCYVIFT*GTNFA 302
           KK E K +N L+W   L  Y  +    G+N++
Sbjct: 313 KKDEKKALNLLAWILKLYSYMSLFILFGSNYS 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,827
Number of Sequences: 5004
Number of extensions: 31465
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)