Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P02
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544           28   6.9  
08_02_0046 - 11576005-11576106,11576529-11576631,11576985-115770...    27   9.1  

>09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544
          Length = 165

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 234 FLSWSCVLNCYCYVIFT*GTNFAIKRYCKTDP 329
           F+ ++ +LN Y Y+ +T  T+ A K+  KT P
Sbjct: 126 FVVFTMILNVYFYMYYTKSTSQAAKKINKTTP 157


>08_02_0046 -
           11576005-11576106,11576529-11576631,11576985-11577022,
           11577244-11577290,11577392-11577694,11579595-11579703
          Length = 233

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 214 YFFFIKQISKDYLVRCSALFK-LIINCFRSLQLSFEENKEQYVR 86
           +FFF+ ++     ++  +L + L+   ++ L L + + KE Y+R
Sbjct: 180 FFFFLPKLGYSPRIKMQSLVQDLVFKFYQFLPLIYHQQKEDYIR 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,420
Number of Sequences: 37544
Number of extensions: 169504
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)