Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P01
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    37   0.49 
UniRef50_Q5KMN2 Cluster: Putative uncharacterized protein; n=1; ...    34   3.5  
UniRef50_Q54MM0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_P55605 Cluster: Uncharacterized protein y4oT; n=2; Rhiz...    33   6.1  
UniRef50_A0Q7D1 Cluster: Peptidoglycan hydrolase; n=11; Francise...    33   8.0  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -2

Query: 659  RSRXRNPGNHTHRTLQRGRRA 597
            RSR R+PGN T RT QRGRRA
Sbjct: 939  RSRLRSPGNRTRRTRQRGRRA 959


>UniRef50_Q5KMN2 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 458

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 53  RDRPSFSTFPTPAPEVPELTDIVSLPADYVXCIAICGQKCCFY 181
           R  P  +  PTP P VP +  +V+LP  Y+  ++I   K   Y
Sbjct: 263 RPSPRPAAAPTPPPPVPSILSLVALPDSYLSSLSIGTLKAILY 305


>UniRef50_Q54MM0 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 892

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 293 LLEISENYSDDDVTAYTDGLSNLVHETDLN---DDDSITDNRSN 171
           L E  E Y D+D   Y +G  +L  E +LN   DD++I +N SN
Sbjct: 306 LNETDEEYEDEDEEDYNEGYDDLELEHELNDSEDDNNIRNNYSN 349


>UniRef50_P55605 Cluster: Uncharacterized protein y4oT; n=2;
           Rhizobiales|Rep: Uncharacterized protein y4oT -
           Rhizobium sp. (strain NGR234)
          Length = 196

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 80  PTPAPEVPELTDIVSLPADYVXCIAICGQKC 172
           P+  P +P +TD+ +LP D++  + +C   C
Sbjct: 4   PSTLPSIPIVTDLAALPGDHLQSVTLCCPSC 34


>UniRef50_A0Q7D1 Cluster: Peptidoglycan hydrolase; n=11; Francisella
           tularensis|Rep: Peptidoglycan hydrolase - Francisella
           tularensis subsp. novicida (strain U112)
          Length = 270

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 344 YKVSHENLREVPRGPSGLLEISENYSDDDVTAYTDGLSNLVHETDLNDDDSI 189
           ++++ + +      P  LL+  ENYS+ D + Y D L +++   +L   DSI
Sbjct: 216 FRITRDKIINQQLPPKTLLDTLENYSELDGSEYKDRLISVIQHNNLRQYDSI 267


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,331,926
Number of Sequences: 1657284
Number of extensions: 10551493
Number of successful extensions: 28245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28226
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)