Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P01
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   3.2  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    26   4.2  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   4.2  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   5.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.3  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 71  STFPTPAPEVPELTDIVSLPA---DYVXCIAICGQKCCFY 181
           +T P   P   ++  IV +PA     + C+AI    C FY
Sbjct: 299 ATSPLLDPRTTQIVSIVPIPAYESQQIYCVAITSTGCRFY 338


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 68  FSTFPTPAPEVPELTDIVSLPADYVXCI 151
           F     P  + P++T  +S+PAD V CI
Sbjct: 308 FPATQMPFLQQPKVTQNISIPADMVGCI 335


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 323 LREVPRGPSGLLEISENYSDDDVTAYTDGLSNLVHETDLNDDDSITDN 180
           L+ +  G   L E  ++  +D+  +Y D +SN+V+E +    D I  N
Sbjct: 350 LQSLADGTDELEEQEDSLMEDEDLSYMDDMSNVVNEDENLIIDEIPSN 397


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 50  VRDRPSFSTFPTPAPEVPELT 112
           V+  P FS FP P  +V ELT
Sbjct: 129 VQPHPPFSVFPAPILDVRELT 149


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 311 PRGPSGLLEISENYSDDDVTAYTDGLSNLVHETDLNDD 198
           P+    +L+I   YS++ +T Y + L NL+ +    D+
Sbjct: 855 PKVQKLVLDIILLYSEEAITTYEENLRNLLDDKKCRDE 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,019
Number of Sequences: 5004
Number of extensions: 43759
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)