Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_P01
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 31 0.81
07_03_0806 + 21654057-21655154,21655728-21655796,21656110-216562... 29 2.5
06_03_0411 - 20520823-20521674 29 2.5
07_03_0155 - 14520957-14521013,14521360-14521400,14521534-145218... 29 3.3
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 29 3.3
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827 29 3.3
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 29 4.3
05_03_0393 + 13435581-13435745,13435804-13436418,13437283-134373... 28 5.7
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 28 5.7
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 251 PSRHRHYNFQKFLVGLTGLEVLRVSFHEKLCTLEPFKCLNLYLSFSKTADD 403
P+ R +F++ L G VL +S EKLC+L C ++ + S T +D
Sbjct: 472 PTAERRISFKEKLDSALG-SVLPLSMKEKLCSLMEHHCSEVHAAGSHTCED 521
>07_03_0806 +
21654057-21655154,21655728-21655796,21656110-21656274,
21656416-21656589,21659506-21659769,21659957-21660070
Length = 627
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 431 AFARPPVLVNHLQFWKTIGIS 369
+FARP + V HL FW I +S
Sbjct: 581 SFARPEISVEHLTFWNAIFVS 601
>06_03_0411 - 20520823-20521674
Length = 283
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 329 ENLREVPRGPSGLLEISENYSDDDVTAYTDGLSNL 225
E REV R P G L SD+ TA DGL L
Sbjct: 63 EEEREVKRSPPGTLRHRRTRSDEAATAALDGLEPL 97
>07_03_0155 -
14520957-14521013,14521360-14521400,14521534-14521834,
14522038-14522113,14522235-14522347
Length = 195
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 65 SFSTFPTPAPEVPELTDIVSLPADYV 142
+FST P P+ V ++ D +PADYV
Sbjct: 123 NFSTAPGPSSRVEDIQDPFVIPADYV 148
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 77 FPTPAPEVPELTDIVSLPADYVXCIAICGQKCCFYCQ 187
FP+ A +P D V+LP+ C CG+ F Q
Sbjct: 75 FPSKAGGIPAWLDPVNLPSGNSRCCGFCGEPLQFVLQ 111
>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
Length = 146
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -2
Query: 509 SNCS*VVRSPSEALGQLLANPTPLG*AFARPPVLVNHLQ 393
S+ + R+ S LG+LLA+P+PL A PP L++ +Q
Sbjct: 2 SSAKTLARAGSSLLGRLLASPSPLR-AGLPPPSLLSRIQ 39
>07_01_0242 +
1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -1
Query: 615 TKRSTCNLTHASAX*VSRRIFSVGHDSDPVVDSFAKQLLLSC*VSFGGTRAVVSKSHPSW 436
TKR HA+ + RI ++ HD V D F K L+ SF +R + S PSW
Sbjct: 832 TKRKAFFKAHATKNFRNSRIKTIKHDGIEVADHFGKSQLM---FSF-YSRLLGSSLQPSW 887
>05_03_0393 +
13435581-13435745,13435804-13436418,13437283-13437349,
13437605-13438239
Length = 493
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 266 DDDVTAYTDGLSNLVHETDLNDDDSI 189
D D DG +L H+TDL+DD I
Sbjct: 321 DSDANLDNDGAVDLDHDTDLDDDTGI 346
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 77 FPTPAPEVPELTDIVSLPADYVXCIAICGQKCCFYCQ 187
FP A VP D V+LP+ C CG+ F Q
Sbjct: 64 FPNKAGGVPAWLDPVNLPSGKSRCCDFCGEPLRFVLQ 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,608
Number of Sequences: 37544
Number of extensions: 294310
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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