Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P01
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81514-7|CAH60785.1|  167|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.      27   8.9  
U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein...    27   8.9  
U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein...    27   8.9  

>Z81514-7|CAH60785.1|  167|Caenorhabditis elegans Hypothetical
           protein F26F2.8 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 329 ENLREVPRGPSGLLEISENYSDDDVTAYTDGLSNLVHETDLND 201
           EN     RGPSG +++ + +SDD      +G +N++ +   +D
Sbjct: 30  ENFLTKQRGPSGRVQLPKTFSDD-----CNGSTNIIKDRSTDD 67


>Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical
           protein ZK678.1 protein.
          Length = 719

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68  FSTFPT-PAPEVPELTDIVSLPADYVXC 148
           FS FP+ P+P  P  T   S P+DY  C
Sbjct: 179 FSHFPSEPSPSKPRATREGSQPSDYTYC 206


>Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68  FSTFPT-PAPEVPELTDIVSLPADYVXC 148
           FS FP+ P+P  P  T   S P+DY  C
Sbjct: 179 FSHFPSEPSPSKPRATREGSQPSDYTYC 206


>U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68  FSTFPT-PAPEVPELTDIVSLPADYVXC 148
           FS FP+ P+P  P  T   S P+DY  C
Sbjct: 179 FSHFPSEPSPSKPRATREGSQPSDYTYC 206


>U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68  FSTFPT-PAPEVPELTDIVSLPADYVXC 148
           FS FP+ P+P  P  T   S P+DY  C
Sbjct: 179 FSHFPSEPSPSKPRATREGSQPSDYTYC 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,028,433
Number of Sequences: 27780
Number of extensions: 254292
Number of successful extensions: 700
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)