Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O24
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.49 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.0  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 608 REKKNHWKIPKKCVFC 561
           R KKN   +P +CVFC
Sbjct: 28  RRKKNKKPLPTECVFC 43


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +2

Query: 392 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 505
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +2

Query: 392 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 505
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +2

Query: 392 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 505
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +2

Query: 392 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 505
           NN + ++ +KYNYN  + N  L Y+ N +  I +   +YY N
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 416 HKYNYNAVSINLIYSFNRVS*IFL--NIYYIN 505
           +KYNYN     L Y+ N +  I +   +YY N
Sbjct: 96  YKYNYNNNCKKLYYNINYIEQIPIPVPVYYGN 127


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 561 TEYTFFWDFPMIFFLTYFINIYS 629
           T +TF +  PMI  + Y+  I S
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVS 236


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 392 NNILLSHLHKYNYNAVSIN 448
           NN + ++ +KYNYN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYN 104


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 392 NNILLSHLHKYNYNAVSIN 448
           NN + ++ +KYNYN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYN 104


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 235 VSFHGTSTPPPSSLLFNVTYCVCAPLV 155
           ++F  T  PP + L+F+     C P V
Sbjct: 137 MTFDQTGIPPTTCLVFSSGSVSCVPSV 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,727
Number of Sequences: 438
Number of extensions: 4129
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)