Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O21
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    27   2.5  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   5.9  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   7.7  

>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 410 WSSAMPGAEPSPCLPNSSFIMLLHSID*DSNCQYVS 517
           WS  + GA P+ C      I   + +D  SNCQ V+
Sbjct: 16  WSVVIAGATPAVCGAPEYIIETQNDLDVLSNCQVVN 51


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 494 DSNCQYVSLFLEPDRF 541
           DS C YVSL   P+RF
Sbjct: 178 DSGCVYVSLLENPERF 193


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 161 HFVLQTWFALTIKKRVQISLNK 226
           HF LQ W  LT+  R ++   K
Sbjct: 348 HFTLQNWARLTVATRAEVERAK 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,642
Number of Sequences: 5004
Number of extensions: 34413
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)