Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O21
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 179  WFALTIKKRVQISLNKFSNRHKKTNNFVFLCL 274
            +F +  KK+ Q   N+ SN  K   NFV L L
Sbjct: 1493 YFVVEHKKKNQQEWNQVSNNVKPGGNFVVLDL 1524


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 379 PPDGEWLPSPMEFSNARG 432
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 373 HGPPDGEWLPSPMEFSNARGRAK-PLPTEFFLHY 471
           H P +  WLP  + ++NA G  +  + T+  LH+
Sbjct: 96  HVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHH 129


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 373 HGPPDGEWLPSPMEFSNARGRAK-PLPTEFFLHY 471
           H P D  W P  + ++NA G  +  L T+  L+Y
Sbjct: 100 HVPSDHIWRPDIVLYNNADGNFEVTLATKATLNY 133


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 394 WLPSPMEFSNARGRAKPLPTEFF 462
           +L S  +F  +RG   P P  FF
Sbjct: 21  YLTSTFDFWKSRGVVGPKPVPFF 43


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 355 LVGRRAHGPPDGEWLP 402
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 373 HGPPDGEWLPSPMEFSNARGRAK-PLPTEFFLHY 471
           H P D  W P  + ++NA G  +  L T+  ++Y
Sbjct: 104 HVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYY 137


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 216 DICTRFLIVNANQVCKTKCF 157
           D+  R ++VNA  VCK   F
Sbjct: 760 DLAARNVLVNAALVCKIADF 779


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,402
Number of Sequences: 438
Number of extensions: 2483
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)