Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_O19
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 32 0.090
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 0.48
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.63
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 29 0.84
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 28 1.5
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 28 1.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 2.6
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 5.9
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 26 5.9
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 7.8
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 25 7.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.8
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.9 bits (69), Expect = 0.090
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = -1
Query: 284 SPDSLYLKKEIYSNTTTSDAASILASKYRAPSRRKLEEIHNSHTNSPTTXKSSKVPKWXK 105
S ++ Y++K+ SN+ D+ S + R + R + + + + S K SK+ K+ K
Sbjct: 250 SNEASYVEKDESSNS--DDSISYKRRRSRNAANRITDYVDSDLSESSMKEKQSKIEKYMK 307
Query: 104 NXXTGDREKQRAALKEWKDL 45
+ + K K W+DL
Sbjct: 308 SDKSSKNFKPPFQKKSWEDL 327
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 29.5 bits (63), Expect = 0.48
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -2
Query: 556 VFTQPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENT 425
+FTQ ++++ E+ DD YE EE ++LYK+ + K+E +
Sbjct: 176 LFTQKQMLQLQNENFKDD-YEKIKEENKRLYKERKSFLSKIEKS 218
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/63 (22%), Positives = 34/63 (53%)
Frame = -2
Query: 562 AIVFTQPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMTSTKREEVEKE 383
A +F ++ N+ +++ D ++ +EE+ + + +Q+Q +L R+EV ++
Sbjct: 2 ATLFHLIDVHGNEYQNVQDHSLQMALEELNQQIEVIQRQEEQLALRKKAIEDARQEVLQQ 61
Query: 382 LQH 374
+QH
Sbjct: 62 IQH 64
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 28.7 bits (61), Expect = 0.84
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 419 NDVHKTRGG*ERVTTPLK-ETLEPKMTLLEARFVPCVHMH 303
++V G E V LK E L+ TLL+A P VH+H
Sbjct: 210 DEVSSESGSNEIVNAKLKNEQLDSNFTLLDAYLEPLVHLH 249
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -1
Query: 221 SILASKYRAPSRRKLEEIHNSHTNSPTTXKSSKVPKWXKNXXTGDREKQRAALKEWKDLR 42
S + S+ +AP + K E + N P+ K V + + + +E A ++E D R
Sbjct: 581 STVESELKAPPKEKSSETSKEYLNEPSVVKDFVVERTPSDKISESKEAFDAKVEEISDQR 640
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 263 KKEIYSNTTTSDAASILA---SKYRAPSRRKLEEIHNSHTNSPTTXKSSKVPKWXKN 102
+ ++S TT D +L+ +K PS + E HT + KS K P+ N
Sbjct: 62 RSNVFSATTPRDILRMLSRALAKNPVPSPAESESSERRHTPQTNSQKSQKTPRLSSN 118
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/90 (27%), Positives = 38/90 (42%)
Frame = -2
Query: 640 FSSLSQEFLERRLKIEEEVNFLGTQKAIVFTQPEIIENDLEDLPDDFYELTIEEVRKLYK 461
F+S Q+ LE K E KA+V + E +DF L + E R+
Sbjct: 1005 FASKVQDHLEDAAKAVTEAC-----KALVRQVESVALKAKEVQHEDFSSLGVHEYRRKEI 1059
Query: 460 DLQQQRLKLENTPLMTSTKREEVEKELQHL 371
+ Q Q LKLEN + + ++ K H+
Sbjct: 1060 EQQVQILKLENDLVAARRRLFDMRKTSYHV 1089
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 577 LGTQKAIVFTQPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMTSTKRE 398
L QK+ + I+E + EDL ELT+E + + Q + L + + + RE
Sbjct: 104 LELQKSQFEKRISILEKEKEDLQRKMEELTVESMEVVRLTRQVETLSTQYSIQRSQWVRE 163
Query: 397 E--VEKELQHL 371
+ +KE+Q L
Sbjct: 164 DEKKKKEIQDL 174
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 5.9
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 661 DSDRRNIFSSLSQEFLERRLKIEEEV-NFLGT--QKAIVFTQPEIIENDLEDLPDDFYEL 491
D D N F+ + L+ ++EEEV LG ++ + +L+ L + Y +
Sbjct: 78 DEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHL-QEHYNI 136
Query: 490 TIEEVRKLYKDLQQQ 446
T E + LYK Q Q
Sbjct: 137 TPERIAVLYKFAQFQ 151
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = -1
Query: 329 RFVPCVHMHFK--WLEESPDSLYLKKEIYSNTTTSDAASILASKYRAPSR-RKLEEIHNS 159
R +PC+ ++E P+ + + Y NT++SDA SI + ++ + KL ++ S
Sbjct: 606 RHIPCLEARPSPNRIQEQPN-IDVPSTRYENTSSSDAVSIHKDEKKSKGKSHKLGKLMMS 664
Query: 158 HTNSPTTXKSSKVPKWXKNXXTGDREKQR 72
K KVP + T D++K++
Sbjct: 665 SKKDKDKSK-EKVPTY----GTSDKKKKK 688
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 7.8
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Frame = -2
Query: 484 EEVRKLYKDL--QQQRLKLENTPLMTSTKR-----EEVEKELQHL*KKH*NQR*LCLK 332
EE + DL +QQ+LKLE L T+R E+ EK+ + L +++ R CLK
Sbjct: 142 EEFERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRNECLK 199
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = -2
Query: 601 KIEEEV--NFLGTQKAIVFTQPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLEN 428
+IEEEV + + A + Q ++ + D +D P + +K K L++ + ++
Sbjct: 57 EIEEEVQESTIADDIADILNQ-QVTQTDEQDTP------VLSLSKKSKKALRKSNAEKKD 109
Query: 427 TPLMTSTKREEVEKEL 380
+ L TS +RE + KE+
Sbjct: 110 SKLRTSRRRERLRKEM 125
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 499 YELTIEEVRKLYKDLQQQRLKLENTPLMTSTKREEVEKELQH 374
YE+T+ EVR+L ++ + EN + E++ E+ +
Sbjct: 100 YEMTVSEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISN 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,146
Number of Sequences: 5004
Number of extensions: 47301
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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