Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O19
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.68 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -2

Query: 661 DSDRRNIFSSLSQEFLERRLK-IEEEVNFLGTQKAIVFTQPEIIENDLEDLPDDFYELTI 485
           D +  N F ++   F     K I++E N  G          ++I+N  +++ D   E+ +
Sbjct: 523 DIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKLIDNIKKEIYDILPEVDV 582

Query: 484 EEVRKLYKDLQQQRLKLEN 428
           EE+    K LQ   +K +N
Sbjct: 583 EEILGEAKVLQNFDIKDKN 601


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 334 SSKVIFGSNVSFRGVVTLSQPPLVLWTSLMGCFL--TLIAVAVNLCIIYVL 480
           S  ++   +V F  VV +  PP  L   L+G +L   +I V++++C+  V+
Sbjct: 279 SISILISLHVFFLLVVEII-PPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 334 SSKVIFGSNVSFRGVVTLSQPPLVLWTSLMGCFL--TLIAVAVNLCIIYVL 480
           S  ++   +V F  VV +  PP  L   L+G +L   +I V++++C+  V+
Sbjct: 279 SISILISLHVFFLLVVEII-PPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 496 ELTIEEVRKLYKDLQQQRLKLENTP 422
           ++TIEE +K  K+L++   K  +TP
Sbjct: 26  KMTIEEAKKTIKNLRKVCSKKNDTP 50


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 493 LTIEEVRKLYKDLQQQRLKLENTP 422
           +TIEE++K  K+L++   K  +TP
Sbjct: 1   MTIEELKKTIKNLRKVCSKKNDTP 24


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 553 FTQPEIIENDLEDLPDDFYELTIEEVRKLYKDL 455
           +T PE+I+ +      D Y L I   + L++ L
Sbjct: 220 YTAPEVIKQNRPTPAADIYSLGIVAWQMLFRKL 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,462
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)