Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O18
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527...    29   3.2  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    29   5.5  

>07_03_0423 +
           18035688-18036572,18036659-18036978,18052618-18052724,
           18053001-18053104,18054129-18054328,18054422-18054522,
           18054695-18054841,18055007-18055166,18055287-18055368,
           18056070-18056336,18056846-18056973,18057513-18057672
          Length = 886

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 478 KYKLQILCKQFFN*IMYVYYFQYFNKTILQYYLFL 582
           KYKL +      N ++  Y+ QY+NK+I  Y  F+
Sbjct: 785 KYKLPLEVLHLVNPLLGGYFSQYYNKSIRSYRYFV 819


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 574 LFLSKFIWEFLKNTNHYASGFLMTP 648
           L L+KF W  LK+ +++A    MTP
Sbjct: 389 LILNKFNWMILKSDSYFAPALFMTP 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,898,233
Number of Sequences: 37544
Number of extensions: 275548
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)