Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O18
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   1.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    24   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.4  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 479 NTNYKFYANNFLTK*CMYITFNI 547
           N NYK Y NN+ +K   Y   NI
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 479 NTNYKFYANNFLTK*CMYITFNI 547
           N NYK Y NN+ +K   Y   NI
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINI 341


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 276 ITLVTRTTQTYLLMLPTGFL 217
           +TL+   T TY+++  TGF+
Sbjct: 30  LTLIVPITLTYVVIFVTGFV 49


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 340 FRLHISKCDLFQTKRTLILW--INFGARLATNL*W*NMPLIKNIFKNYKYKLQILCKQ 507
           FR   S  D++     ++ W  +++G R   N  W N  +IK+I K Y+    + C +
Sbjct: 812 FRKFTSASDVWSMG--IVCWEVMSYGERPYWN--WSNQDVIKSIEKGYRLPAPMDCPE 865


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 301 EIPSMI--ELYNSCDQNYTNLLVNVT 230
           E+P++   + Y  CD+ Y ++  N+T
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNIT 239


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 301 EIPSMI--ELYNSCDQNYTNLLVNVT 230
           E+P++   + Y  CD+ Y ++  N+T
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNIT 239


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 301 EIPSMI--ELYNSCDQNYTNLLVNVT 230
           E+P++   + Y  CD+ Y ++  N+T
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNIT 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,897
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)