Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_O17
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 117 2e-27
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 117 2e-27
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.51
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.88
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 2.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.0
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 27 2.7
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.7
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 4.7
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 4.7
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 4.7
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.2
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 8.2
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.2
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 117 bits (281), Expect = 2e-27
Identities = 55/123 (44%), Positives = 77/123 (62%)
Frame = -1
Query: 713 RIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXX 534
R+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 68 RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127
Query: 533 DEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAES 354
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+
Sbjct: 128 EFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIET 187
Query: 353 KKV 345
+++
Sbjct: 188 EEL 190
Score = 77.8 bits (183), Expect = 1e-15
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Frame = -2
Query: 352 KKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 173
++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ I
Sbjct: 188 EELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKI 247
Query: 172 RADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 59
R DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 248 REDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 117 bits (281), Expect = 2e-27
Identities = 55/123 (44%), Positives = 77/123 (62%)
Frame = -1
Query: 713 RIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXX 534
R+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 68 RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127
Query: 533 DEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAES 354
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+
Sbjct: 128 EFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIET 187
Query: 353 KKV 345
+++
Sbjct: 188 EEL 190
Score = 76.2 bits (179), Expect = 4e-15
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Frame = -2
Query: 352 KKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 173
++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ I
Sbjct: 188 EELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKI 247
Query: 172 RADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 59
R DPS +K K+ + + +RKLT ERK R K
Sbjct: 248 REDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.51
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 208 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 50
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.88
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 181 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 50
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -2
Query: 406 ASMFLIPS--KDSLAMMQNPKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYI 233
+++F+ P K L +QNPK +F L + Y+ S+ ++ R+F I
Sbjct: 274 STLFVTPLAIKKLLQYLQNPKSDEGNSPFLWVFVLLIGPYLASVVKELYVHVSRRFMLRI 333
Query: 232 KLGVTADAIEAIYKK 188
K +T + IYKK
Sbjct: 334 KAAIT----QMIYKK 344
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -2
Query: 277 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 116
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 155 QEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGFRRK 18
+EER K+ L + E E+ + + E+K + ++ L QE +RK
Sbjct: 133 EEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRK 178
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 584 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 676
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 211 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 98
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -2
Query: 193 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASCIKRL 35
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A K++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQM 761
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 280 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 107
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 106 KRKLTLAERKNRIKQKKAS 50
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 205 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASCIKR 38
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 220 TADAIEAIYKKAHEAIRADPSHKKKELK 137
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -2
Query: 346 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 167
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 166 DPSHKKKE 143
+ KKE
Sbjct: 419 SSENNKKE 426
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 301 AEYMRSLEQDDEDSFKRQFSKYIK 230
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = -2
Query: 376 SLAMMQNPKKFNAEVHRAHIFGLHVAEYMRSLEQD--DEDSFKRQFSKYIKLGV----TA 215
++ +Q +KFN + +GLH+ R ++ D + ++ +R S + GV
Sbjct: 475 TIGQLQRIEKFNLQETFGVNYGLHLYNISRGIDTDIINNETPRRSISVDVNWGVRFVFQE 534
Query: 214 DAIEAIYKKAHEAI 173
D I+ + + HE +
Sbjct: 535 DGIDFLKRLLHELL 548
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 193 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASCIKR 38
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 193 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 53
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,831
Number of Sequences: 5004
Number of extensions: 51623
Number of successful extensions: 244
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -