Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O14
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          20   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 73  FTCTIYINLCVKLTKPSKMTILXF 2
           FTC I   +C KLT   +  +  F
Sbjct: 636 FTCNIMDAICTKLTADCQPGVTAF 659


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 137 FKKSEDVSVTDGSFHVSDDLT 199
           + KS+D+ V D S + S D+T
Sbjct: 118 YVKSDDIWVPDISVYNSGDMT 138


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 341 TCTKAGVFRKKAIHL 385
           T +KAG+ RKK + L
Sbjct: 56  TTSKAGIHRKKVLLL 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,017
Number of Sequences: 438
Number of extensions: 1724
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)