Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O12
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...   102   2e-22
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    33   0.21 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    33   0.21 
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.28 
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score =  102 bits (245), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 77/131 (58%)
 Frame = -3

Query: 557 MPFARYVEPGRVALVADGPLKGNLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 378
           M F R V+ GRV  +A G  +G L ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 377 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 198
            LK      T+ V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+KL  A+  RN
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120

Query: 197 RARTAVFKSLK 165
           R        LK
Sbjct: 121 RIVRVELAKLK 131


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -3

Query: 383 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 210
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 209 VKRNRARTAVFKSLKVKAARA 147
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -3

Query: 383 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 210
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 209 VKRNRARTAVFKSLKVKAARA 147
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 296 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 150
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 311 NEKWTESQWAQKLANKEKRAQMTDYDRFK 225
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 436 GPSTSARV---WSITSTTLTKFPFKGPSATRATRPGS 537
           GPSTS+ V    S+ +TT  + PF  P++ +   PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,218
Number of Sequences: 27780
Number of extensions: 273716
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)