Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O12
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.58 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.58 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 150 CWYLRQEKXP*SGCEKSAHQEGDQKTKRR 64
           C Y R +K    G ++ A QE  Q+TK R
Sbjct: 162 CQYCRYQKCLAMGMKREAVQEERQRTKER 190


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 150 CWYLRQEKXP*SGCEKSAHQEGDQKTKRR 64
           C Y R +K    G ++ A QE  Q+TK R
Sbjct: 162 CQYCRYQKCLAMGMKREAVQEERQRTKER 190


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 72  WFFGRLLGAHFFRSRFRDXFLAEGTSTRSLHL 167
           WF  R   A FFR   +    A GT++ +  L
Sbjct: 336 WFLTRQNPAAFFRGMMQAWMTALGTASSAATL 367


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 330 RFPHETSRGC 359
           ++PHE  RGC
Sbjct: 492 KWPHEDKRGC 501


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 405 LKPTPSHKIPPQI 367
           +K  P HK+PP I
Sbjct: 62  VKYLPGHKLPPNI 74



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 334 KRGQMLNSMKNGQKVNGP 281
           K  ++   M NGQK+ GP
Sbjct: 284 KISELEKEMLNGQKLQGP 301


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 330 RFPHETSRGC 359
           ++PHE  RGC
Sbjct: 582 KWPHEDKRGC 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,058
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)