Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O08
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.3  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   9.1  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    25   9.1  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 160 SVSHQSRYDVHSSPSVVTEEVAAPAIVEARSLLPINA 50
           S+S    Y    SPSV   E     ++ ARSL+P  A
Sbjct: 208 SISEDDLYSKRLSPSVSYSEFDEQLLLHARSLIPSKA 244


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 328 Q*YRELPRRVLLVQQQNEKLPLEQ 399
           Q Y+EL RR+  +Q +NEK  LE+
Sbjct: 2   QYYKELARRLHTLQSKNEKEALEK 25


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 88  LEQRLPQSQLRERSAHRNATDEKLKHHRCTMKALKRHKLTELQGQVRHEKQEPQLEHR*L 267
           L+ +   ++L       N  D +LK     ++  K  +LTEL+  +R + Q+ Q     +
Sbjct: 481 LQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQN-KEEELTELRKLLREQTQDSQKLRLLV 539

Query: 268 QLVKCERQ 291
           + ++ ERQ
Sbjct: 540 EQLELERQ 547


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 118 RERSAHRNATDEKLKHHRCTMKALKRHKLTELQGQVRHEKQEPQLEH 258
           R RS HR+ +  + + +R  +    RH  T    + R ++ E + EH
Sbjct: 142 RTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSK-RDDRYERRREH 187


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +1

Query: 73  GLRRWL--EQRLPQSQLRERSAHRNATDEKLKHHRCTMKALKRHKLTELQGQVR 228
           GL  WL    + PQ QLR         + +L   R  +   +R  + E++G  +
Sbjct: 2   GLTSWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAK 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,721
Number of Sequences: 5004
Number of extensions: 32106
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)