Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_O08
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 31 0.58
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 30 1.3
06_02_0217 + 13170731-13170826,13170886-13171203 30 1.3
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 30 1.8
12_01_0396 - 3128047-3128273,3128350-3128632,3128717-3128874,312... 29 3.1
02_01_0737 + 5492446-5492770,5492818-5493614 28 5.4
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 27 9.4
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 27 9.4
07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893 27 9.4
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 187 LKRHKLTELQGQVRHEKQEPQLEHR*LQLVKCERQL*TGER-QLQLH 324
LKR LT ++ +EKQ+ LE L+L + E+Q+ GE + +LH
Sbjct: 363 LKRSDLTTMETMTEYEKQKRMLEDLQLRLEEAEQQILDGENLRKRLH 409
>08_02_1620 - 28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/92 (23%), Positives = 44/92 (47%)
Frame = +1
Query: 127 SAHRNATDEKLKHHRCTMKALKRHKLTELQGQVRHEKQEPQLEHR*LQLVKCERQL*TGE 306
+A + A+ L H+ + + ++ KQ+ Q EH +Q + +RQ+
Sbjct: 814 NAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQ-EHHMMQNQQMKRQMFQQF 872
Query: 307 RQLQLHRQ*YRELPRRVLLVQQQNEKLPLEQH 402
+Q Q+ +Q +LP + L +QQ ++ + QH
Sbjct: 873 QQKQMLQQ---QLPAQQQLQKQQQSQMQVPQH 901
>06_02_0217 + 13170731-13170826,13170886-13171203
Length = 137
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 337 RELPRRVLLVQQQNEKLPLEQHPRLLATFVHQ 432
R + R+LL++++ E+LP +Q L F+H+
Sbjct: 7 RRIRERLLLLEREKEELPAQQQEEKLPIFIHK 38
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +1
Query: 148 DEKLKHHRCTMKALKRHKLTELQGQVRHEKQEPQLEHR*LQLVKCERQL*TGERQLQLHR 327
DE+ K + AL R + +L V +KQ+ Q E LQ + ++Q RQL L +
Sbjct: 441 DEQRKSEH--VSALVRQQQQQL---VALQKQQQQQEEAALQRQRMQQQQALQRRQLFLEQ 495
Query: 328 Q*YR-ELPRRVLLVQQQNEKLPLEQHPRLLATFVH 429
Q + L ++++L QQQ +++ + LA H
Sbjct: 496 QQQQAALQQQLMLEQQQQQQMMAALQQQQLAILFH 530
>12_01_0396 -
3128047-3128273,3128350-3128632,3128717-3128874,
3129097-3129314,3129682-3129912,3130630-3130691
Length = 392
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 145 TDEKLKHHRCTMKALKRHKLTELQGQVRHEKQEPQLEHR*LQ 270
T + KH + MKA+KR + L G Q+P + HR L+
Sbjct: 97 TQYRRKHKKVNMKAMKRWAIQILTGLEYLHSQKPAIIHRDLK 138
>02_01_0737 + 5492446-5492770,5492818-5493614
Length = 373
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 235 FHAEPVLEARSVYAASVPSLYIGGASVSHQSRYDVHSSPS 116
F + V S++AA++P+ GGASV H S V SS S
Sbjct: 235 FVGQAVSIGGSLFAAAMPNNGGGGASVFHMSIIKVSSSSS 274
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -1
Query: 325 YGAGAVSHQSRVDVRTSPAVVSDAQVVAPAFHAEPVLEARSVYAASVPSLYIGGASVSHQ 146
Y A A ++ S SP++ + +FH P + S A S PS+ G A++
Sbjct: 101 YHAPAAAYPSYPSPNPSPSISPSS-----SFHHHPEPPSPSPSAPSYPSIADGLANMHVS 155
Query: 145 SRYDVHSSPS-VVTEEVAAPAIVEARSLLP 59
R+D PS ++P+++ + P
Sbjct: 156 DRHDYPPPPSPAAVPAASSPSVLPPSASFP 185
>09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/133 (21%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Frame = +1
Query: 40 VITRRLSAKENGLRRWLEQRLPQSQLRERSAHRNATDEKLKHHRCTMKALKRHKLTE-LQ 216
V T++ ++ L++ Q Q+QL ++ H+ +L+ + L++ +L + +Q
Sbjct: 647 VPTQQPPMQQQQLQQQQNQLQQQNQLHQQ--HQLQPQNQLQQQHQLQQQLQQQQLQQHMQ 704
Query: 217 GQVRH-EKQEPQLEHR*LQLVKCERQL*TGERQLQLHRQ*YRELPRRVLLVQQQNEKLPL 393
Q + Q+ Q + LQ + + Q+ ++Q Q+ + ++ +++ QQQ ++L
Sbjct: 705 LQTQGLPLQQQQSQGHPLQQQQMQ-QMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQ 763
Query: 394 EQHPRLLATFVHQ 432
+Q P+++ T + Q
Sbjct: 764 QQQPQMVGTGMGQ 776
>07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893
Length = 342
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1
Query: 277 SPAVVSDAQVVAPAFHAEPVLEARSVYAASVPSLYIGGASVSHQSRYDVHSSPSVVTEEV 98
+PAV SDA+++ + A+P E+ Y S S G ASV S S T E
Sbjct: 141 TPAVFSDAELILSSIGAQPPPES---YDGSRYSTECGAASVGGDGSLSSLSGYSQATAEF 197
Query: 97 A 95
A
Sbjct: 198 A 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,001
Number of Sequences: 37544
Number of extensions: 220761
Number of successful extensions: 684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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