Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O01
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    54   4e-09
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   5.1  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    24   6.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   8.8  

>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 54.4 bits (125), Expect = 4e-09
 Identities = 31/68 (45%), Positives = 38/68 (55%)
 Frame = -3

Query: 206 MLEVTCNDRLGKKVRVKCXP*RXPWVI*RS**PHKLALDTTK*YSRNGTQYXKDHIKLAD 27
           M+EV CNDRLGKKVRVKC P        +     +   D  +   +      KD+I LAD
Sbjct: 1   MIEVLCNDRLGKKVRVKCMPDDTVGDF-KKLVAAQTGTDPRRIVLKKWHSVFKDNITLAD 59

Query: 26  YEIHDGMN 3
           YEIHDGM+
Sbjct: 60  YEIHDGMS 67



 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = -2

Query: 135 VGDLKKLIAAQTGTRYDKIVLKKWYTV 55
           VGD KKL+AAQTGT   +IVLKKW++V
Sbjct: 24  VGDFKKLVAAQTGTDPRRIVLKKWHSV 50


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 218  ISSQFY*EIKYINSNFLFVLVILPPFKIFT 307
            ISS  Y ++ + +SNFLF  + +  + + T
Sbjct: 1204 ISSTLYLKVSFCSSNFLFKTISVLVYDLIT 1233


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 188 CMLLQAFCSQISSQFY*EIKYINSNFLFVLVILPPF 295
           C L + F   +S +      +I+ + + VL++LPPF
Sbjct: 69  CRLKKKFIKSLSKKII-SYHFISFHTIVVLLLLPPF 103


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 102 FVRLLTSLNHPRXSSGXAFNSNLLTESIIACYFKHFAL 215
           F+  + SLN+P   S   ++ +LL +   + Y KH A+
Sbjct: 838 FLLRVGSLNNPIVFSSANYSYDLLQKENNSVYIKHAAI 875


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,020,207
Number of Sequences: 5004
Number of extensions: 15813
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)