Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O01
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0025 - 25165438-25165708,25165807-25166048,25166191-251662...    49   1e-06
12_01_0284 + 2117288-2117509                                           46   7e-06
11_01_0276 + 2057486-2057707                                           46   7e-06
04_04_0548 + 26172595-26173189,26173346-26173473,26173606-261738...    27   4.6  

>02_05_0025 -
           25165438-25165708,25165807-25166048,25166191-25166222,
           25167174-25167231,25167331-25167438
          Length = 236

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 30/69 (43%), Positives = 37/69 (53%)
 Frame = -3

Query: 212 SKMLEVTCNDRLGKKVRVKCXP*RXPWVI*RS**PHKLALDTTK*YSRNGTQYXKDHIKL 33
           ++M+EV  NDRLGKKVRVKC        + +     +      K   +      KDHI L
Sbjct: 162 AEMIEVVLNDRLGKKVRVKCNEDDTIGDL-KKLVAAQTGTRAEKIRIQKWYNIYKDHITL 220

Query: 32  ADYEIHDGM 6
           ADYEIHDGM
Sbjct: 221 ADYEIHDGM 229



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 18/27 (66%), Positives = 24/27 (88%)
 Frame = -2

Query: 135 VGDLKKLIAAQTGTRYDKIVLKKWYTV 55
           +GDLKKL+AAQTGTR +KI ++KWY +
Sbjct: 187 IGDLKKLVAAQTGTRAEKIRIQKWYNI 213


>12_01_0284 + 2117288-2117509
          Length = 73

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 18/27 (66%), Positives = 24/27 (88%)
 Frame = -2

Query: 135 VGDLKKLIAAQTGTRYDKIVLKKWYTV 55
           +GDLKKL+AAQTGTR +KI ++KWY +
Sbjct: 24  IGDLKKLVAAQTGTRPEKIRIQKWYNI 50



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 29/67 (43%), Positives = 34/67 (50%)
 Frame = -3

Query: 206 MLEVTCNDRLGKKVRVKCXP*RXPWVI*RS**PHKLALDTTK*YSRNGTQYXKDHIKLAD 27
           M+EV  NDRLGKKVRVKC        + +     +      K   +      KDHI L D
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDL-KKLVAAQTGTRPEKIRIQKWYNIYKDHITLRD 59

Query: 26  YEIHDGM 6
           YEIHDGM
Sbjct: 60  YEIHDGM 66


>11_01_0276 + 2057486-2057707
          Length = 73

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 18/27 (66%), Positives = 24/27 (88%)
 Frame = -2

Query: 135 VGDLKKLIAAQTGTRYDKIVLKKWYTV 55
           +GDLKKL+AAQTGTR +KI ++KWY +
Sbjct: 24  IGDLKKLVAAQTGTRPEKIRIQKWYNI 50



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 29/67 (43%), Positives = 34/67 (50%)
 Frame = -3

Query: 206 MLEVTCNDRLGKKVRVKCXP*RXPWVI*RS**PHKLALDTTK*YSRNGTQYXKDHIKLAD 27
           M+EV  NDRLGKKVRVKC        + +     +      K   +      KDHI L D
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDL-KKLVAAQTGTRPEKIRIQKWYNIYKDHITLKD 59

Query: 26  YEIHDGM 6
           YEIHDGM
Sbjct: 60  YEIHDGM 66


>04_04_0548 +
           26172595-26173189,26173346-26173473,26173606-26173866,
           26173988-26174250,26176748-26177099
          Length = 532

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 95  VPVCAAINFFKSPTXIVRXCI*LEPS 172
           V +C+++NF +SPT ++     LEP+
Sbjct: 15  VLLCSSVNFIQSPTDVLGPVALLEPT 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,964,412
Number of Sequences: 37544
Number of extensions: 84802
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)