Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_O01
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   2.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   3.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   8.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   8.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 142 RQGLHLTRTFLPSRSLHVTSSI 207
           R G HL  T++PS  + V S I
Sbjct: 212 RLGYHLFHTYIPSALIVVMSWI 233


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 242 IKYINSNFLFVLVILPPFKIFTAV 313
           I++I + +L  L+   PF I+T V
Sbjct: 159 IRFILAAWLIALISAIPFAIYTKV 182


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 71  LSTILSYLVPVC 106
           + TIL  LVPVC
Sbjct: 1   MKTILIALVPVC 12


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 71  LSTILSYLVPVC 106
           + TIL  LVPVC
Sbjct: 1   MKTILIALVPVC 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,807
Number of Sequences: 438
Number of extensions: 980
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)