Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N23
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    98   8e-23
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 97.9 bits (233), Expect = 8e-23
 Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
 Frame = -3

Query: 567 ILECNKQCTCSYQCGNRLVQLGPLKGLMIKKCDIVQKGFGLFTNVFVRNGSFICEYIGEL 388
           I ECNK+C C   C NR+VQ G      I +     +G+G+ T   ++ GSF+ +Y+GE+
Sbjct: 471 IYECNKRCNCDIDCINRVVQRGTKMQFCIFRT-ANGRGWGVKTMKTIKKGSFVTQYVGEV 529

Query: 387 LTKDQAFKRYHHNKTNKEMNYIFCLIEHCGTEVIETFYDPSKFGNIGRYINHSCEPNSQI 208
           +T ++A KR           Y+F L  +   E      D + +GNI  +INHSC+PN  +
Sbjct: 530 ITNEEAEKRGKEYDA-AGRTYLFDLDYNESEEQCPYTVDAAIYGNISHFINHSCDPNLAV 588

Query: 207 LPV---RYDMPIPKLAIFACEDIKPGSEIT 127
             V     D  +PKLA+FA +DIK   EIT
Sbjct: 589 YGVWINCLDPNLPKLALFATKDIKQNEEIT 618


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 387 LTKDQAFKRYHHNKTNKE-MNYIFCLIEHCGTEVIETF 277
           +TKDQ ++ + HN   KE      C +E     +  TF
Sbjct: 103 VTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENMTVTF 140


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 387 LTKDQAFKRYHHNKTNKE-MNYIFCLIEHCGTEVIETF 277
           +TKDQ ++ + HN   KE      C +E     +  TF
Sbjct: 103 VTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENMTVTF 140


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -3

Query: 414 FICEYIGELLTKDQAFKRY---HHNKTNKEMNYIFCLIEHCGTEVIETF---YDPSKFGN 253
           F C+  G++L    + KR+    H +  +E   + C   +C    + T    Y  S+ G+
Sbjct: 6   FTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPGD 65

Query: 252 I 250
           I
Sbjct: 66  I 66


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 348 KTNKEMNYIFCLIEHC-GTEVIETFYDPSKF 259
           KT K+  Y++ L+E C G E+     D   F
Sbjct: 433 KTFKDRKYLYMLMEACLGGELWTVLRDKGHF 463


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 IYLDHRKSL*PQYHNVQLNKICNSSLCLFY 350
           I L+H +    + HNV +N I  +S C  +
Sbjct: 262 IQLEHFEMKIKRKHNVFVNNILAASACSLF 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,732
Number of Sequences: 438
Number of extensions: 3415
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)