Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N21
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   103   1e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    96   2e-20
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   1.2  
03_05_0161 + 21400580-21401695                                         30   2.1  
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409...    29   3.7  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  103 bits (247), Expect = 1e-22
 Identities = 57/135 (42%), Positives = 77/135 (57%)
 Frame = -2

Query: 495 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 316
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 315 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 136
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 135 RARTAVFKSLKVKAA 91
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 50/117 (42%), Positives = 70/117 (59%)
 Frame = -2

Query: 492 PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 313
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 312 LKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 142
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 11  GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 190
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 332 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 427
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>02_04_0258 +
           21339682-21339806,21340635-21340730,21340905-21340980,
           21341085-21341143,21341280-21341380,21341447-21341773,
           21341861-21342021,21342100-21342303,21342735-21342966,
           21343629-21344239
          Length = 663

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 575 SRKHFVYFSVDCRNILYIQKPPNIYFFT 658
           S KH+VY+++D RN+  I    NIY FT
Sbjct: 339 SGKHYVYYAIDSRNVGAIFN--NIYEFT 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,474
Number of Sequences: 37544
Number of extensions: 367611
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)