Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N20
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        26   0.31 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        26   0.31 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        26   0.31 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 474 DLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLGHE 638
           D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+LG E
Sbjct: 281 DYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 474 DLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLGHE 638
           D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+LG E
Sbjct: 281 DYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 474 DLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLGHE 638
           D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+LG E
Sbjct: 281 DYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +1

Query: 181 FNSA*LVKFNSSDVILNKFSFRVDKCSLFKHAIDKSLECLQSFLVGLLVTRSCTL 345
           F +A  V F +  +  +      DK  L+   +   L C  +FL+    T+ C L
Sbjct: 125 FKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQECKL 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,018
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)