Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N16
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    80   1e-17
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 80.2 bits (189), Expect = 1e-17
 Identities = 35/80 (43%), Positives = 52/80 (65%)
 Frame = -2

Query: 403 APVVKSSYDITPEGHFQFNYETGNGIYAQAEGAVKNVNSEYPAIEVKGAYKYTSPDGQPI 224
           A +     ++  +G++  N+ET NGI  Q  G  K V++E P +  +G+  YT+PDGQ +
Sbjct: 27  AVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQV 85

Query: 223 DLAYVADENGYQPQGSHLPT 164
            + YVADENG+Q QGSH+PT
Sbjct: 86  SITYVADENGFQVQGSHIPT 105


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 393 SNPATTSPLKATSNSTTRPATEFT 322
           + PAT S + ATSN+T    T  T
Sbjct: 236 TGPATPSAVVATSNATAAMTTGTT 259



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -3

Query: 387 PATTSPLKATSNSTTRPATEFTPRLKVPSRTSTQNTPP 274
           PATT     T+ +TT   T  T         S    PP
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPP 691


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 294 STQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 184
           S  N   +K+   +  LP+ DNP  S  +L     NP
Sbjct: 293 SRMNLTLAKMEKTSKPLPMVDNPE-STGNLVYIYNNP 328


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -3

Query: 600 ECKTTASTYLIRLTIGNLNEFGRPMSQTV 514
           +C+   + +++   +G +N F  P+  TV
Sbjct: 651 DCQPGVTAFIVTSWLGYMNSFVNPVIYTV 679


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -2

Query: 310 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 221
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -2

Query: 310 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 221
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 309 VPSRTSTQNTPPSKLRVPTSTLP 241
           +P   S   TP S +  P  TLP
Sbjct: 654 LPRPISCHTTPDSFIEAPNKTLP 676


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -2

Query: 310 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 221
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,251
Number of Sequences: 438
Number of extensions: 2733
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)