Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N15
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    29   0.54 
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   1.7  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    26   5.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   6.7  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.9  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   8.9  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 570  HKNNSLAIFKLLITTKMLSISSKTCLEHIDL*VII 674
            H N SL +   L  +K + +S+  C+EH+ L + I
Sbjct: 934  HNNQSLLLAASLTLSKFMCLSNNFCMEHLPLLITI 968


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 733 CIFAPFNAGRSVGSTSPKHEIMTYKSICSKQVFDEMDSI 617
           C FA   A  S+ + SPK +     +  +K++FD +D +
Sbjct: 362 CFFAVLIASYSLANISPKMQSFVSCASAAKKIFDTIDRV 400


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 537 FPDLYYKILKFLIIE-FDFLFCWL 469
           F D  + I+K   +E F FLFCWL
Sbjct: 71  FLDCNFHIIKRYALEKFGFLFCWL 94


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 129 DACXVALIKXRKQCEIFELM 70
           DAC V ++K RK CE  +LM
Sbjct: 721 DACIVRVMKDRKVCEHNQLM 740


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 185 VLLLILKIFTKQSYMT 232
           VLLL+LK+F + SY+T
Sbjct: 37  VLLLLLKVFVQLSYLT 52


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 79  KNLTLFPXLN---QSHXTSVKYFLCIANIFSRMSQEYTSFIINFEDFHKTVLYDCSFH 243
           +N   FP L    Q+  T+VK  +   N  +  S + + +++ FE+   TVL DC  H
Sbjct: 21  ENKLCFPPLKVVCQAPETTVKGQVANTNKHNVYSTKNSMYLLGFEEILNTVL-DCEPH 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,027
Number of Sequences: 5004
Number of extensions: 51104
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)