Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N15
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    31   0.75 
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561...    28   7.0  

>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 76  FKNLTLFPXLNQSHXTSVKYFLCIANIFSRMSQEYTSFIINFEDFHKTVLY 228
           F N +  P L + + T    F  +  IFS+  Q    F   F ++H+T++Y
Sbjct: 201 FLNFSSCPALKELYFTKNCCFDSVKKIFSQSMQCLRIFCCQFSEYHRTLIY 251


>04_01_0425 +
           5609819-5610331,5610450-5610664,5612720-5612959,
           5613122-5613232,5613789-5613987,5614097-5614453
          Length = 544

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 VRNIQVL-LLILKIFTKQSYMTALST*LQFNLYNYLNRLSY 289
           + N+++  L ++   TK   +TAL    + NL NYL+ LSY
Sbjct: 367 IENLEIANLSVIFDGTKSGLLTALLAEFKLNLNNYLSDLSY 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,666
Number of Sequences: 37544
Number of extensions: 256831
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)