Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_N14
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 260 1e-70
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.58
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 28 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.0
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 3.1
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 4.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 4.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 25 7.2
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 9.5
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 9.5
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 260 bits (637), Expect = 1e-70
Identities = 118/161 (73%), Positives = 147/161 (91%)
Frame = -2
Query: 649 HIRXSLPENVKLQRVEERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVEVFRQTI 470
H+R SLP+ VK+QRV+ERLSALGN++ACNDYVALVHPD++++TEEI+AD L+VEVFRQT+
Sbjct: 83 HLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTV 142
Query: 469 AGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPLVAGTVNRGSDVVAAGMVVNDW 290
AGNVL GSY ALSN+G LVHP+T+IQ+QDELSSLLQVPLVAGT+NRGSDV+ AG+VVNDW
Sbjct: 143 AGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDW 202
Query: 289 CAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASLIDS 167
CAF GLDTT+TE++V ES+FKL DA+P+AI S R +L++S
Sbjct: 203 CAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTLVES 242
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.58
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 216 ASFNLKTLSITEISV-DVVSSPQNAHQS-LTTIPAATTSLPLLTVPAT 353
AS T S+T ++ +V P +H S TT+P T+ TVP T
Sbjct: 52 ASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPT 99
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 616 LQRVEERLSALGNVIACNDYVALVHP 539
L +V +R S G V +C+D+ LVHP
Sbjct: 164 LAKVWQRTSPQGTVSSCDDFSYLVHP 189
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.0
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Frame = +3
Query: 246 TEISVDVVSSPQNAHQSLTTIPAATTSLPLLTVPATKGTXXXXXXXXXXCIFVFG--CTS 419
T SV S+P + TT +TS+P + P T I TS
Sbjct: 429 TSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTS 488
Query: 420 PPRLLNAV*EPTSTFPAIVCLNTSTFNVSAN--ISSVSLSKSGCTSAT*SLQAMTLPRAL 593
P TS + +S + +S++ ++S ++ + CT++T L T +
Sbjct: 489 TPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTST 548
Query: 594 SRSSTRCNFTFS 629
++T C + S
Sbjct: 549 PLATTNCTTSTS 560
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 409 PKTNIQDQDELSSLLQVPLVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTE 254
P+ +++DE + L+A +R V+ + ND C LDTTS +
Sbjct: 300 PRGKTKEEDEAYAK---DLLASVKDRAEHVMLVDLARNDVSRVCDLDTTSVD 348
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -2
Query: 565 NDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQ 386
N + L P+ + +++A T + +GN+L+ +L + ++ P + D
Sbjct: 186 NGEIILRDPNSFQPVNKVVAHTGTISDI--DTSGNLLLSCGYSLRHGTYMLDPFVKVWDL 243
Query: 385 DELSSLLQVPLVAG 344
LSSL+ +P AG
Sbjct: 244 RNLSSLVPIPFPAG 257
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +3
Query: 447 EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSSTRCNFT 623
+P+S+ + TST + S+ +SS +L+ S ++ + + ++ +S S + +FT
Sbjct: 109 DPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFT 167
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 447 EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSST 608
E T+++ + + + +ST S SSVS + S S+ S T P+ S SST
Sbjct: 912 EGTTSYSSNITVTSSTLKPSLT-SSVSTASSYIASSASSNTLSTEPKTFSSSST 964
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 236 TLNNRNLS*CCVQSAECTPIVDHHSSSYDITASVNCSGN 352
T NN N S S TPI +SSS + + N S N
Sbjct: 201 TTNNWNSSSSFTSSTSSTPISSSYSSSGTLPSKSNKSSN 239
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 228 LKTLSITEISVDVVSSPQNAHQSLTTI 308
LK L I + VDVV +P+N ++L +
Sbjct: 259 LKGLPIAGVHVDVVRAPENLDRALAVL 285
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = -2
Query: 472 IAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPLVAGTVNRGSDVVAAGMVVND 293
+ +++ YT+ S GG + D + + V + V RG DV + +VVN
Sbjct: 684 LLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNY 743
Query: 292 WC 287
C
Sbjct: 744 DC 745
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 126 IKHKIYFTVQCYDILSMSDALIVDVIAVGLASFNLKTLSIT 248
+K + F QC + ++ A V VIAVGL + + K L +T
Sbjct: 162 VKVTVIFLAQCVKVTAVFLAKCVKVIAVGLYN-SKKDLVVT 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,399
Number of Sequences: 5004
Number of extensions: 50370
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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