Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N14
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759...   255   2e-68
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996...   180   9e-46
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877...    30   1.8  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   4.2  
02_05_1128 + 34314866-34315294,34315365-34315440,34315548-343156...    28   7.4  

>07_03_1443 +
           26575172-26575181,26575709-26575805,26575900-26575985,
           26576073-26576117,26576788-26576918,26577016-26577126,
           26577215-26577472
          Length = 245

 Score =  255 bits (625), Expect = 2e-68
 Identities = 118/161 (73%), Positives = 139/161 (86%)
 Frame = -2

Query: 649 HIRXSLPENVKLQRVEERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVEVFRQTI 470
           H+R  LP+ V +QR++ERLSALGN +ACND+VAL HPDLDK TEE++AD L VEVFRQTI
Sbjct: 83  HLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPDLDKATEELIADVLGVEVFRQTI 142

Query: 469 AGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPLVAGTVNRGSDVVAAGMVVNDW 290
           AGN+LVGSY A++NRGGLVHP T+I+D DELS+LLQVPLVAGTVNRGS+V+AAGM VNDW
Sbjct: 143 AGNILVGSYCAITNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDW 202

Query: 289 CAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASLIDS 167
            AFCG DTT+TE+SVIESVFKL + +P AI   MR SLIDS
Sbjct: 203 TAFCGSDTTATELSVIESVFKLREGQPAAIVDDMRKSLIDS 243


>01_01_1232 -
           9966448-9966708,9966818-9966928,9967142-9967176,
           9967469-9967599,9967683-9967779,9967907-9967916
          Length = 214

 Score =  180 bits (438), Expect = 9e-46
 Identities = 81/122 (66%), Positives = 104/122 (85%)
 Frame = -2

Query: 532 DKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPL 353
           D+ TEEI++D L VEVFRQTIAGN+LVGS+ A SN+GGLVHP+T+++DQ ELS+LL+VPL
Sbjct: 90  DQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVPL 149

Query: 352 VAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASLI 173
            AG++NRGS+VVAAGM VNDW AFCG DTT+TE+SV+ESVF+L D +P A+ + M  SL+
Sbjct: 150 AAGSINRGSEVVAAGMAVNDWAAFCGADTTATELSVVESVFRLRDGRPGALGADMSRSLV 209

Query: 172 DS 167
            S
Sbjct: 210 VS 211


>04_03_0824 +
           20086639-20087263,20087282-20087463,20087569-20087724,
           20087867-20087989,20088079-20088247,20088384-20088466,
           20088641-20088742,20089246-20089359,20089735-20089811,
           20089884-20089962,20090060-20090128,20090235-20090410,
           20090460-20090561,20090678-20090768,20090878-20090976,
           20091141-20091326
          Length = 810

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 481 RQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQV 359
           R + A   ++G   A S+  GLVHP T+   Q  +SS  QV
Sbjct: 73  RPSAAAAAVLGEPVAASDDHGLVHPSTDFASQALVSSTQQV 113


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 248  RNLS*CCVQSAECTPIVDHHSSSYDITASVNC 343
            +N+  CC + A  T ++  HS S D+    NC
Sbjct: 1158 KNIQDCCEEVAGVTSLILEHSESMDLLPKRNC 1189


>02_05_1128 +
           34314866-34315294,34315365-34315440,34315548-34315631,
           34315729-34315784,34316302-34316358,34316459-34316508,
           34316587-34316739,34316842-34316992,34317469-34317633
          Length = 406

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 482 QTNNSGKRTCWFLHCVEQPRRAG--TPED-KYTG 390
           +T  +GK   W L+  EQ RR G   P D KYTG
Sbjct: 366 KTKKNGKGKAWLLNKKEQLRRRGREVPADTKYTG 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,253,682
Number of Sequences: 37544
Number of extensions: 316127
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)