Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_N12
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 136 2e-33
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.3
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 7.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.5
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 9.9
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 9.9
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 9.9
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.9
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.9
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 136 bits (330), Expect = 2e-33
Identities = 77/187 (41%), Positives = 99/187 (52%), Gaps = 1/187 (0%)
Frame = -2
Query: 611 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 435
M D+ + GL LN +L +KS++ GY PSQAD VF+ VG AP A P+ RWY QI
Sbjct: 1 MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60
Query: 434 ASYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXR 255
A+Y A T P ++DLFGS
Sbjct: 61 ATYDLA--------TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERV 112
Query: 254 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 75
+ Y KK+ KP + KS + LDVKPWDDET M E+E VR+I+M+GL+WG SKLVPVG+
Sbjct: 113 AE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGF 171
Query: 74 GXKKLQM 54
G K Q+
Sbjct: 172 GVNKFQI 178
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 200
FG S HF+ Y VF IG I P W++ N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 635 KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 537
K TLK + V DVKT G + N E Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 379 PPVLNPRLPPQQRKTTMTT 323
PPVL P LPP Q T T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 578 LNDLNQYLAEKSYVSGYTPSQADVQVF 498
L+ +++YL ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 390 GALRPCFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 500
G L F ++ + +I+PS +G GR + LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 9.9
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = -3
Query: 448 GIIKLLHTLRLNAKHGLRAPAH*PPVLNPRL--------PPQQRKTTMTTTLIYLVLVTR 293
GI+ LR+N KH LR H V+N L K +L+ V +
Sbjct: 15 GILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQENASMDEKIEKIDSLLSRVSTVK 74
Query: 292 KRMQKLNEFEKNV*KHMLTRSL 227
K+M+ L++ E K +R L
Sbjct: 75 KKMKHLHDCEALFIKQTKSRLL 96
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 239 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 144
DK+S P LIA++ + ++ D+ +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 440 DYTIVVRGEG*RPAPCQLAQILEHQLE 520
+Y +VV G G P C + L QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,929
Number of Sequences: 5004
Number of extensions: 47405
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -