Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N10
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 238 NSVLINNKN*KYNVIRFDKEL 176
           N+   NN N KYN   ++K+L
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKL 340


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 80  LAKIQR--DFFEXKMVLVFTVFVNIV 9
           L ++QR  D+F   M+LVFT+   +V
Sbjct: 50  LDRLQRVVDWFRKNMLLVFTIAAVLV 75


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 266 VFIENSYLCIIKVCNKNAELCH 331
           + I+N  +CI+K      + CH
Sbjct: 151 ILIKNERICILKSITCALQFCH 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,093
Number of Sequences: 438
Number of extensions: 3443
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)