Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N09
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   1.9  
SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces pomb...    24   4.4  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    24   4.4  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    23   7.7  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    23   7.7  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 16/63 (25%), Positives = 35/63 (55%)
 Frame = +1

Query: 34  HSFLRVLSKPFFVFTXLSPFLVXSLLQIQSTALRLXNXIIFHFNVSYVTTI*YTLIGRKF 213
           +SF+ VL+  F V + + PFL  S+L ++ + L+L    +  + + ++  + ++L+   F
Sbjct: 155 NSFIVVLNSIFVVSSCIGPFL-GSILLLRVSLLQL---YLISWTIHFINFVFHSLLAVFF 210

Query: 214 KKK 222
             K
Sbjct: 211 SSK 213


>SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 154 FHFNVSYVTTI*YTLIGRKFKKKTFFLLSHQTL 252
           FH  VSYVT +   +I   F  + F++  ++++
Sbjct: 4   FHIIVSYVTVVLAIIIAITFAARRFWISRYRSI 36


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 208 KFKKKTFFLLSHQTLCFVFIKMTINKSAGRIHL 306
           KF+KK        T C ++ ++ +N+  G++H+
Sbjct: 137 KFRKKNNAEPGSGTACRIYGQLVVNRVNGQLHI 169


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 205 RKFKKKTFFLLSHQTLCFVFIKMT 276
           R FKK   F+LS Q L FV +  T
Sbjct: 282 RNFKKLLQFILSGQHLSFVQVTST 305


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 252 MFRVYKDDNKQIGRPNS 302
           ++R  K DN  IGRPNS
Sbjct: 128 VYRDIKPDNFLIGRPNS 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 914,675
Number of Sequences: 5004
Number of extensions: 12683
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)