Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N09
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0175 + 11241151-11241157,11241253-11241425,11241619-112417...    27   2.2  
01_04_0100 + 16017117-16017196,16017283-16017694                       26   6.7  

>11_03_0175 +
           11241151-11241157,11241253-11241425,11241619-11241702,
           11242895-11242936,11243407-11243517,11245384-11245575,
           11245776-11245859,11246162-11246259,11246670-11246859
          Length = 326

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 223 TFFLLSHQTLCFVFIKMTINKSAGRIH 303
           T FLL+H   CF+F  MT N S  ++H
Sbjct: 143 TTFLLTHA--CFLFYHMTSNMSLRKLH 167


>01_04_0100 + 16017117-16017196,16017283-16017694
          Length = 163

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 143 LXXRRAVDWIWRRLKTRKGER 81
           L  RR+  W+WR L+  K +R
Sbjct: 110 LDVRRSCRWVWRGLRRTKADR 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,368,435
Number of Sequences: 37544
Number of extensions: 66113
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)