Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N09
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    29   0.85 
Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 IIYLNREEI*KKNFFLTFASNSMFRVYKDDNKQIGRP 296
           IIYL   +  +KNFF TF      ++   ++ Q+ RP
Sbjct: 287 IIYLTMNDTIRKNFFRTFCRFKNTKIDTTNSGQVARP 323


>Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical
           protein T01E8.7 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 109 LQIQSTALRLXNXIIFHFNVSYVTTI*YTLIGRKFKKKTFFLLSHQTLCFVFIKMTI 279
           + +  T + L    I H   +   TI +    RK ++  FF+ ++  L F F+  TI
Sbjct: 100 IYVMLTVIVLTGVAILHIFENRYNTIIFEFSSRKVRRALFFIFNY-LLAFTFVIPTI 155


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 134 RRAVDWIWRRLKTRKGERXVK 72
           +RA+ + W RL+TR G + V+
Sbjct: 66  KRAIRFTWHRLQTRNGGKRVE 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,000,514
Number of Sequences: 27780
Number of extensions: 68097
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)