Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N08
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    28   1.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   1.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.3  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   9.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   9.1  

>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 723 SYGFPNPPYAANPYSDAWDKPTPGGTKRRVYFLL 622
           S+G    P+    +SD  D+P PG    R+YFL+
Sbjct: 114 SWGLSERPFLGIIFSD--DEPYPGDVASRIYFLV 145


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -2

Query: 735 PEQPSYGFPNPPYA--ANPYSDAWDKPTPGGTKRRVYFLLFVAITQPLL 595
           P  PS+  P+PPY   A P  D      PG  K R Y L       PLL
Sbjct: 150 PHPPSFVQPHPPYGIFAAPILDVRVLTNPGAVK-RTYNLCLDISKYPLL 197


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 391  LHYSYVIKN-SQFIKILCILFRVIIQRRSATSATRS 495
            L Y +  +N +Q + +LC ++ ++IQ+ S+ S T S
Sbjct: 3642 LGYDHDFENRAQAVSMLCQIYAIVIQKHSSISPTAS 3677


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 762 LQLLSGSQGPEQPSYGFPNPPYAANPYSDAWDKPT 658
           L  L   Q  +Q  Y FPNP Y  N  S +  +PT
Sbjct: 180 LDCLQFGQLIDQDPYLFPNPSYKKNDSSISKAEPT 214


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 702  PYAANPYSDAWDKPTPGG 649
            PY A P   AW  PTPGG
Sbjct: 958  PYTA-PTPGAWAAPTPGG 974


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,688
Number of Sequences: 5004
Number of extensions: 47075
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)