Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N07
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF100655-8|ABO16452.1|  470|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF100655-6|ABO16453.1|  470|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF100655-4|ABO16447.1|  470|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF045643-2|AAC02596.2|  663|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 415 LLQILFKHQYKKQS*SYTVFVLCPTEQQLSS 507
           ++Q+LF H +++ S   T+  LCPT ++ SS
Sbjct: 16  VVQLLFAHGHRQLSIGETIENLCPTCEKTSS 46


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 415 LLQILFKHQYKKQS*SYTVFVLCPTEQQLSS 507
           ++Q+LF H +++ S   T+  LCPT ++ SS
Sbjct: 16  VVQLLFAHGHRQLSIGETIENLCPTCEKTSS 46


>AF100655-8|ABO16452.1|  470|Caenorhabditis elegans Hypothetical
           protein C44C8.8 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 21  RFLASLFCGSRVINXALLLSAAKQPVLNRMQNVYVLLHNMIIKCGKNKNKA*QIFEIAKG 200
           ++L     G RVI     LS   +PVL    ++   +HN+ + C  N     Q+FE  K 
Sbjct: 261 KYLLKKLFGGRVIVKVDELSIDCRPVLRTPASLKFQIHNLQLSCMDNN----QLFEAIKP 316

Query: 201 YYGASPALPPLVL 239
               S  L  + L
Sbjct: 317 ILDFSTPLSSITL 329


>AF100655-6|ABO16453.1|  470|Caenorhabditis elegans Hypothetical
           protein C44C8.9 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 21  RFLASLFCGSRVINXALLLSAAKQPVLNRMQNVYVLLHNMIIKCGKNKNKA*QIFEIAKG 200
           ++L     G RVI     LS   +PVL    ++   +HN+ + C  N     Q+FE  K 
Sbjct: 261 KYLLKKLFGGRVIVKVDELSIDCRPVLRTPASLKFQIHNLQLSCMDNN----QLFEAIKP 316

Query: 201 YYGASPALPPLVL 239
               S  L  + L
Sbjct: 317 ILDFSTPLSSITL 329


>AF100655-4|ABO16447.1|  470|Caenorhabditis elegans Hypothetical
           protein C44C8.10 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 21  RFLASLFCGSRVINXALLLSAAKQPVLNRMQNVYVLLHNMIIKCGKNKNKA*QIFEIAKG 200
           ++L     G RVI     LS   +PVL    ++   +HN+ + C  N     Q+FE  K 
Sbjct: 261 KYLLKKLFGGRVIVKVDELSIDCRPVLRTPASLKFQIHNLQLSCMDNN----QLFEAIKP 316

Query: 201 YYGASPALPPLVL 239
               S  L  + L
Sbjct: 317 ILDFSTPLSSITL 329


>AF045643-2|AAC02596.2|  663|Caenorhabditis elegans Hypothetical
           protein F58H7.7 protein.
          Length = 663

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 21  RFLASLFCGSRVINXALLLSAAKQPVLNRMQNVYVLLHNMIIKCGKNKNKA*QIFEIAKG 200
           ++L     G RVI     LS   +PVL    ++   +HN+ + C  N     Q+FE  K 
Sbjct: 261 KYLLKKLFGGRVIVKVDELSIDCRPVLRTPASLKFQIHNLQLSCMDNN----QLFEAIKP 316

Query: 201 YYGASPALPPLVL 239
               S  L  + L
Sbjct: 317 ILDFSTPLSSITL 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,535
Number of Sequences: 27780
Number of extensions: 228034
Number of successful extensions: 401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)