Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N06
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    29   0.67 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   1.6  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   2.1  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   3.6  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   4.7  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   4.7  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   6.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.3  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   8.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   8.3  

>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 569 QKYYNEKYQKTIEEYKNRMIVLPSLTEGELFLNK 468
           QK YN+ Y K   +Y+   + L S+T+ + F+NK
Sbjct: 66  QKAYNKLYAKIANDYEFLRLHLQSITKYDEFMNK 99


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 314 NDLNTLCKKPYQNTKYGKSYNGTFVYNFALKMDTQNDPKVFVNQYLKDSTTILMFYNSL 138
           N L +LC K Y  T + + Y        A+K+D +    VF+N Y  D T ++  Y+ +
Sbjct: 345 NSLKSLCSKCYLRTSFPEKY--------AIKVDFEFLKNVFINTY--DRTRLVNDYDEI 393


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 600 HLQHNVANK*TMYQAYRYFTGVNPPE 677
           HL+H++     +Y   +YF G N PE
Sbjct: 353 HLRHSIVESPLLYGQDQYFNGENAPE 378


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 572 LELYQCFHQSSPA*CSKQINYVPSL 646
           LEL  CF + +PA C K  +Y   L
Sbjct: 285 LELLVCFSEGAPAMCRKSSDYTDQL 309


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +3

Query: 258 RLSILCILIWLFTQCI*IINLLQTTLKFGIFMYFIHMIIAFGSLFNLSI 404
           RL  LC  IW F   I I+ +L  T  F I   FI M   FG L +++I
Sbjct: 111 RLPYLCNAIWSFYTTIVILAVLHVTHVFPI-TTFIDM---FGPLMSVAI 155


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 551 KYQKTIEEYKNRMIVLPSLTEGELFLNKNKIQHEDCFIAAKM-LLQYFEIDAKIKKRPKS 375
           KY++++EE+++RM+ L  L    +      +Q +  F    + LL+  E++   KKR   
Sbjct: 177 KYEESLEEFEDRMVQLKELEPDRVENVVRLLQMQIRFHQKSLDLLKGLEMNGFSKKRDNV 236

Query: 374 N 372
           N
Sbjct: 237 N 237


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 215 YPFLVQNYKQRYRYKTFHTLYFDMAFY 295
           YP L  N+K RY+    +T+Y +  F+
Sbjct: 106 YPKLASNWKPRYQISERNTVYLNAFFH 132


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 254 NGTFVYNFALKMDTQNDPKVFVNQYLKDSTTILMFYNSLCTVYDELVLALG 102
           +GT  YN  L+   ++   + +  YLKD  TI    +S       + LALG
Sbjct: 547 SGTGYYNVVLETLKKSSSNILIMPYLKDYKTIENESSSSPLSLSSIRLALG 597


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 311 DLNTLCKKPYQNTKYGKSYNGTFVYNFALKMDTQNDPKVFVNQYLKDSTTILMFYNSLCT 132
           D+N L ++ Y+ T Y  +Y+  FV     K  T  + K F+ ++L  + T+   + ++  
Sbjct: 672 DVNLLIEQFYEITSYESNYDDAFV---EYKDATVANRKDFI-EFLFHNITVSSKHTAVIF 727

Query: 131 VYDEL-VLALGLRH 93
             D L VL + L H
Sbjct: 728 TSDLLMVLKIALNH 741


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 461 IQHEDCFIAAKMLLQYFEIDAKIKKRPKSNYHVNKIHKYAKFQCCLQQINDLNTLCKKPY 282
           + H+D  IA+ +L  Y  I   I     S    NK+ KY + +     IND  T     Y
Sbjct: 492 VPHQDLAIASSLLPLYTNIGGAIGAAIASPIFSNKVPKYLR-EYLPSSIND--TQVYNFY 548

Query: 281 QNTKYGKSYN-GTFVYNFALK 222
            ++   + Y  GT + + A+K
Sbjct: 549 SDSSLIREYPVGTEIRDGAIK 569


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 218 DTQNDPKVFVNQYLKDSTTILMFYN 144
           DT+ +P +F +QY++ +T ++  YN
Sbjct: 192 DTRGNPLIFEDQYIELTTNMVEDYN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,792
Number of Sequences: 5004
Number of extensions: 57675
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)