Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N06
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-2|AAO12421.1|  597|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U88165-1|AAO12420.1|  656|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    28   7.8  
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U88165-2|AAO12421.1|  597|Caenorhabditis elegans Hypothetical
           protein F54C1.5b protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 656 EVPIGLVHSLFVCYIMLEMIDESIGTIRGQKYYNEK--YQKTIEEYKNRMIVLPSLTEGE 483
           EVP  ++ +L VCYIM    DE+   ++  +   E     K  E++ +  I+  SL  G 
Sbjct: 429 EVPAMILANLVVCYIMTNQTDEAELILKAVENEEEAALMMKPNEKFFHNSII--SLVIGS 486

Query: 482 LFLNKNKIQ 456
           L+ +K   +
Sbjct: 487 LYCSKGNFE 495


>U88165-1|AAO12420.1|  656|Caenorhabditis elegans Hypothetical
           protein F54C1.5a protein.
          Length = 656

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 656 EVPIGLVHSLFVCYIMLEMIDESIGTIRGQKYYNEK--YQKTIEEYKNRMIVLPSLTEGE 483
           EVP  ++ +L VCYIM    DE+   ++  +   E     K  E++ +  I+  SL  G 
Sbjct: 488 EVPAMILANLVVCYIMTNQTDEAELILKAVENEEEAALMMKPNEKFFHNSII--SLVIGS 545

Query: 482 LFLNKNKIQ 456
           L+ +K   +
Sbjct: 546 LYCSKGNFE 554


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 388 RDPKAIIM*IKYINMPNFSVVCNKLMI*IHC 296
           +DP + I  I  I   +F VVCN L+I I C
Sbjct: 17  QDPSSFIASILMIVNGSFGVVCNSLIIYIFC 47


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical
           protein D2021.1 protein.
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 626 FVCYIMLEMIDESIGTIRGQKYY-NEKYQKTIEEYKNRMIVLPSLTE 489
           F+C I L     +  T  G+ Y  N +YQ  +E +KN M+  P   E
Sbjct: 367 FICAIELNSTHSAAWTDLGELYEKNAQYQDALECFKNAMLNNPVAPE 413


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 263 FHTLYFDMAFYTVYLNH*FVANNTEIWHIYVFYSHDNCFWVSF*S*HQSRNTVK 424
           F  +Y D+ F  +Y+N   + +   +W+     +  NCF + F    Q RNT K
Sbjct: 296 FQVIYSDLGFLFIYINVDAICDTLLLWN-----ASTNCF-ICFLMSSQYRNTAK 343


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 425 AFSLL*SSLHVEFCFCSKII--HLLSNLVVQSFCFCILQLF 541
           A S   SSL + FCFCS ++      +  +  F FC+ Q F
Sbjct: 337 AISASVSSLFMVFCFCSALLLFFFREHSPMAIFFFCLFQFF 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,327,193
Number of Sequences: 27780
Number of extensions: 315474
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)