Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N06
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = -1

Query: 509 VLPSLTEGELFLNKNKIQHEDCFIAAKMLLQYFEIDAKIKKR-PKSNYHVNKIHKYAKFQ 333
           V PS  + +L L +   +     I  K +    +  A I+ R PKS         +A+F 
Sbjct: 133 VFPSKMDHQLPLKQRSSEFCGKNIGMKRIFTSSQNIAVIEYRIPKSG---KGFSLFARFL 189

Query: 332 CCLQQINDLNTLCKKPYQNTKYGKSYNGTFV 240
              +  N L T   +PY    YG+  N T+V
Sbjct: 190 KNPRPCNVLATSLTEPYTLRNYGRRINCTYV 220


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 314 NDLNTLCKKPYQNTKY 267
           N+ N  CKK Y N  Y
Sbjct: 103 NNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 314 NDLNTLCKKPYQNTKY 267
           N+ N  CKK Y N  Y
Sbjct: 103 NNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 314 NDLNTLCKKPYQNTKY 267
           N+ N  CKK Y N  Y
Sbjct: 103 NNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 314 NDLNTLCKKPYQNTKY 267
           N+ N  CKK Y N  Y
Sbjct: 103 NNYNNNCKKLYYNINY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,496
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)