Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N05
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       45   7e-05
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    39   0.005
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    36   0.025
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    29   3.8  
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959...    28   8.8  

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -2

Query: 725 VTAVDSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 564
           +  VD QP    GG+L+ V G L+   D  P  + Q F L P G +FYVQ+D+FRL
Sbjct: 64  INTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -2

Query: 725 VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 567
           + AVD+Q    GGV + V G L   +D    + Q+F L P    ++V +DI R
Sbjct: 86  IKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLNDILR 138


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 725 VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 567
           +  VDSQ    GGV + V G L   +     + Q+F L P    ++V +D+FR
Sbjct: 78  IKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVLNDMFR 130


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 716 VDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFYVQHDIFR 567
           VD+Q   +GGV I V G +  +    H + Q+F L P     ++V +D+ R
Sbjct: 83  VDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYFVLNDMLR 133


>07_03_1748 -
           29195037-29195427,29195552-29195679,29195810-29195938,
           29196334-29196412,29196508-29196671,29196754-29196936,
           29197021-29197146,29197237-29197328,29197412-29197508,
           29198013-29198339
          Length = 571

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 7   YKCLHIMQRVLVATLNKAQKDAKFSNSYSQFLIALIYLDNQTDLRSM 147
           Y CL  +Q +L A     Q      N Y+QF++    LD   DL+ +
Sbjct: 466 YACLEGLQNILQAGAVGKQGQGSTVNPYAQFILECGGLDKLEDLQEV 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,254,228
Number of Sequences: 37544
Number of extensions: 358134
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)