Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_N04
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0148 + 1242454-1242634,1242774-1243648                           29   4.1  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    29   4.1  
09_04_0022 + 13865093-13865195,13865452-13865587,13865864-13866218     27   9.4  

>11_01_0148 + 1242454-1242634,1242774-1243648
          Length = 351

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 369 FHPTSSEVVAYLFFNYLFYKFVNKRTTRL 455
           FHPT +EV+     NYL  KF+N   T L
Sbjct: 20  FHPTDAEVI----LNYLLEKFINPSFTSL 44


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 4    IYYVSLLGLLSS---FLIYTHLQGKSXKXKH 87
            IY V +LG LS    + +YTHL GK+    H
Sbjct: 1545 IYAVGILGALSGAIVYTLYTHLSGKAASPLH 1575


>09_04_0022 + 13865093-13865195,13865452-13865587,13865864-13866218
          Length = 197

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 358 EIGLN*IYTYVLNLLIRNLLFYDF*NSNKYVI*H 257
           ++GL   YT+V  L + N+ F+DF   +K++I H
Sbjct: 13  QLGLLISYTFVFPLALHNMHFFDF--GSKFLIRH 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,899,007
Number of Sequences: 37544
Number of extensions: 191868
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)