Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M24
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55BE6 Cluster: PREDICTED: similar to CG30424-PA...    40   0.092
UniRef50_Q7PDN3 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    34   3.4  
UniRef50_UPI0000DB7C2D Cluster: PREDICTED: similar to retinoblas...    33   6.0  
UniRef50_A5K2A3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  

>UniRef50_UPI0000D55BE6 Cluster: PREDICTED: similar to CG30424-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG30424-PA - Tribolium castaneum
          Length = 398

 Score = 39.5 bits (88), Expect = 0.092
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = -1

Query: 282 KHNQTIFMNRKKRLKDRIRITKNIKG*AKMNLR*YYIKSIYCIILNNRDECFVSKIL 112
           +  + + ++ K RLK  +++ K +K     N+  YYIK+++  I+  +D+ F +K L
Sbjct: 244 QEQERVLIDNKNRLKPAVKLIKKLKEKTHPNIASYYIKTVFLHIIEQKDQSFWNKSL 300


>UniRef50_Q7PDN3 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=5;
            Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
            PFEMP3 - Plasmodium yoelii yoelii
          Length = 1781

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 283  KTQPNNFHEQKKKIERQNKNYEKYQRISQN 194
            ++Q  NF  QK KI ++NK Y+ YQ I+Q+
Sbjct: 1725 RSQNKNFLPQKNKINKKNKFYQSYQTINQS 1754


>UniRef50_UPI0000DB7C2D Cluster: PREDICTED: similar to
           retinoblastoma-like protein 1 isoform a; n=2;
           Apocrita|Rep: PREDICTED: similar to retinoblastoma-like
           protein 1 isoform a - Apis mellifera
          Length = 1006

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 461 ALAIRLKTIKKYY-SQHLHNCASNA*FKIIQVIFTGTLPSLNRDSNSK 601
           A+A+  K IK+YY   H++   +    +  Q  F+G L +LN D NSK
Sbjct: 253 AIAVEAKVIKEYYLKNHINKLFNERVLRGDQSNFSGILEALNFDGNSK 300


>UniRef50_A5K2A3 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1847

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 283  KTQPNNFHEQKKKIERQNKNYEKYQRISQNELKM 182
            ++Q  NF  +K KI ++NK Y+ YQ I+Q+ L +
Sbjct: 1787 RSQNKNFLPKKNKINKKNKFYQSYQSINQSFLSI 1820


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,213,377
Number of Sequences: 1657284
Number of extensions: 10826834
Number of successful extensions: 28501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28438
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)