Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M24
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.0  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   4.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   9.2  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 447  ILYYISFCLDLLILCNAISFNSDSCQ-*K*NLCHKNQNEDCFLL 319
            + Y +++ L  LI CN   FN D  Q  K N    +Q  +CF L
Sbjct: 1966 LFYALAYDLKFLIRCNQSQFNCDILQLLKENKQMSSQLHECFQL 2009


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 159 CIILNNRDECFVSKILILSPIXLYGQRPNMIFVICAXRMDECIAALLFDE 10
           CI+ + RD   V ++++ +P+      P+ I    A  +DE    ++ D+
Sbjct: 90  CILWDLRDGSIVYQVVLSAPVWSASLHPHKINTFVASLLDESPQLIIVDD 139


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 280 TQPNNFHEQKKKIERQ-NKNYEKYQRISQNELKMILY*KHLLYNIK**RRMFCK*NTNIK 104
           TQ + F  Q+KKI    N N  KY   S +  +  L  KH +Y +K    +    +  I+
Sbjct: 477 TQVHLFDLQQKKIVSSFNANRVKYVVWSNDNSQAALLGKHYVYIVKKNLELITSIHETIR 536

Query: 103 SHXFVW 86
               VW
Sbjct: 537 IKSAVW 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,631
Number of Sequences: 5004
Number of extensions: 50863
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)