Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M24
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.2  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   4.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   4.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   9.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   9.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   9.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   9.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.7  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 678 KVQSRLTKLESIPNNNEKKVICRN 749
           K+ S L+   +  NNN KK+ C N
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 678 KVQSRLTKLESIPNNNEKKVICRN 749
           K+ S L+   +  NNN KK+ C N
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 678 KVQSRLTKLESIPNNNEKKVICRN 749
           K+ S L+   +  NNN KK+ C N
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNN 103


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 10 LIKQQRCNAFIHS 48
          LIK+ +CNAFI S
Sbjct: 28 LIKKNKCNAFIVS 40


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 262 HEQKKKIERQNKNYEKYQRISQNELK 185
           H +KKK+  +  + ++Y R  + E K
Sbjct: 256 HNEKKKLLEERTSRKRYSRSREREQK 281


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 656 ILRHQFDTKNEIKPFKI 606
           + ++  +TKN++ PF I
Sbjct: 36  VYKNNIETKNQLSPFNI 52


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 250 KKIERQNKNYEKYQRISQNELKMI 179
           K I   N NY+K Q  + N ++ I
Sbjct: 88  KTIHNNNNNYKKLQYYNINYIEQI 111


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 250 KKIERQNKNYEKYQRISQNELKMI 179
           K I   N NY+K Q  + N ++ I
Sbjct: 88  KTIHNNNNNYKKLQYYNINYIEQI 111


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 250 KKIERQNKNYEKYQRISQNELKMI 179
           K I   N NY+K Q  + N ++ I
Sbjct: 88  KTIHNNNNNYKKLQYYNINYIEQI 111


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 250 KKIERQNKNYEKYQRISQNELKMI 179
           K I   N NY+K Q  + N ++ I
Sbjct: 88  KTIHNNNNNYKKLQYYNINYIEQI 111


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 250 KKIERQNKNYEKYQRISQNELKMI 179
           K I   N NY+K Q  + N ++ I
Sbjct: 321 KTIHNNNNNYKKLQYYNINYIEQI 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,592
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)